Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LP43_0315Dihydropteroate synthase-like. (490 aa)    
Predicted Functional Partners:
LP43_0316
Hypothetical protein.
 
     0.960
LP43_0317
Hypothetical protein.
 
     0.960
LP43_0314
Hypothetical protein.
 
     0.952
LP43_0335
Dihydroneopterin aldolase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.
  
 
 0.894
LP43_0057
Delta 1-pyrroline-5-carboxylate synthetase.
 
     0.796
LP43_0334
2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase.
  
 
 0.794
LP43_2544
2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase.
  
 
 0.794
LP43_0507
Beta-ribofuranosylaminobenzene 5'-phosphate synthase.
 
     0.787
LP43_0287
Formylmethanofuran hydrolase subunit B.
 
     0.786
ffsA
Formylmethanofuran--tetrahydromethanopterin N-formyltransferase; Catalyzes the transfer of a formyl group from 5-formyl tetrahydromethanopterin (5-formyl-H(4)MPT) to methanofuran (MFR) so as to produce formylmethanofuran (formyl-MFR) and tetrahydromethanopterin (H(4)MPT); Belongs to the FTR family.
 
     0.779
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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