Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LP43_0324Carboxyl-terminal protease; Belongs to the peptidase S41A family. (453 aa)    
Predicted Functional Partners:
LP43_0411
TPR domain protein.
 
 
 0.939
LP43_0325
Hypothetical protein.
  
  
 0.901
LP43_0852
Putative lipoprotein nlpC precursor.
    
 
 0.831
LP43_0323
DJ-1/YajL/PfpI superfamily.
     
 0.811
gpmI
2,3-bisphosphoglycerate-independent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
     
 0.791
LP43_2452
N-acetylmuramoyl-L-alanine amidase.
 
  
 0.750
LP43_0322
Chemotaxis regulator.
       0.722
LP43_0596
Hypothetical protein.
  
   0.721
LP43_2044
Hypothetical protein.
  
   0.721
LP43_0019
Hypothetical protein.
   
 
 0.714
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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