Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
LP43_0400Various polyols ABC transporter, periplasmic substrate-binding protein. (439 aa)    
Predicted Functional Partners:
LP43_0401
Multiple polyol-specific dehydrogenase; Belongs to the mannitol dehydrogenase family.
 
   
 0.899
guaA
GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP.
     
 0.765
LP43_0399
Mannitol permease.
 
     0.759
LP43_2480
ABC-type tungstate transport system, ATP-binding protein; Belongs to the ABC transporter superfamily.
     
 0.662
LP43_0753
Chemotaxis protein CheV.
     
  0.527
LP43_2283
Chemotaxis protein CheV.
     
  0.527
LP43_2296
Nitrate ABC transporter, ATP-binding protein.
    
  0.490
LP43_1430
Alkaline phosphatase; Belongs to the alkaline phosphatase family.
   
 
 0.476
LP43_0402
Glucose-selective porin OprB.
  
    0.462
LP43_2223
DNA polymerase III delta prime subunit.
    
  0.417
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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