STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LP43_0473Phytoene desaturase, pro-zeta-carotene producing. (429 aa)    
Predicted Functional Partners:
LP43_0474
Phytoene synthase.
  
 0.983
LP43_1927
Phytoene synthase.
 
  
 0.880
LP43_0475
Ferredoxin, 2Fe-2S.
       0.781
LP43_1208
Alkane-1 monooxygenase.
     
 0.622
LP43_0471
Oxidoreductase, short-chain dehydrogenase/reductase family.
       0.601
LP43_0472
Hypothetical protein.
       0.601
LP43_0476
Octaprenyl-diphosphate synthase/Dimethylallyltransferase/Geranyltranstransferase (farnesyldiphosphate synthase)/Geranylgeranyl pyrophosphate synthetase; Belongs to the FPP/GGPP synthase family.
     
 0.577
LP43_0524
Ubiquinol--cytochrome C reductase iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
     
 0.557
LP43_1816
Hypothetical protein.
  
     0.456
LP43_0470
GGDEF domain protein.
  
    0.403
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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