Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LP43_0509Hypothetical protein. (115 aa)    
Predicted Functional Partners:
LP43_0517
Hypothetical protein.
 
  
 0.824
xoxJ
XoxJ protein.
 
    0.713
mxaK-2
MxaK protein.
  
     0.678
LP43_0506
Methylene tetrahydromethanopterin dehydrogenase.
 
     0.673
mxaA-2
MxaA protein.
  
     0.671
LP43_1304
Hypothetical protein.
  
     0.662
LP43_2456
RND-type multidrug efflux pump, membrane permease.
  
     0.644
mxaS-2
MxaS protein.
  
     0.639
LP43_1493
Hypothetical protein.
  
     0.632
LP43_2153
Hypothetical protein.
  
     0.623
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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