Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
xoxJXoxJ protein. (293 aa)    
Predicted Functional Partners:
LP43_2118
Hypothetical protein.
    
 0.908
xoxF
Methanol dehydrogenase large subunit protein.
 
 
  0.892
mxaD
MxaD protein.
 
  
  0.843
LP43_0747
Cytochrome c-555 precursor (Cytochrome c555).
 
 
 0.827
LP43_1304
Hypothetical protein.
 
 
 0.827
LP43_0511
Hypothetical protein.
 
     0.819
mxaF
Methanol dehydrogenase, large subunit.
 
 
  0.816
xoxF-2
Methanol dehydrogenase large subunit protein.
 
 
  0.816
xoxF-3
Methanol dehydrogenase large subunit protein.
 
 
  0.816
xoxF-4
Methanol dehydrogenase large subunit protein.
 
 
  0.816
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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