Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LP43_0552Oxidoreductase, FAD-binding. (396 aa)    
Predicted Functional Partners:
LP43_0551
Oxidoreductase, aldo/keto reductase family.
 
  
 0.963
LP43_0555
Lipopolysaccharide core biosynthesis protein WaaP, heptosyl-I-kinase; Catalyzes the phosphorylation of heptose(I) of the outer membrane lipopolysaccharide core; Belongs to the protein kinase superfamily. KdkA/rfaP family.
 
  
  0.820
LP43_0553
Phosphoheptose isomerase 1.
 
     0.800
LP43_0556
Serine/threonine protein kinase.
 
     0.771
LP43_1154
SAM-dependent methyltransferase.
  
     0.735
LP43_0554
UDP-glucose:(heptosyl) LPS alpha1,3-glucosyltransferase WaaG.
 
  
  0.729
LP43_0559
InaA protein.
  
  
  0.690
LP43_2026
Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex.
   
 
 0.676
hldE
ADP-heptose synthase/D-glycero-beta-D-manno-heptose 7-phosphate kinase; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose. In the N-terminal section; belongs to the carbohydrate kinase PfkB family.
 
  
  0.663
LP43_1290
Hypothetical protein.
  
     0.660
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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