Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
yciLYciL protein. (99 aa)    
Predicted Functional Partners:
LP43_0575
Intracellular septation protein IspA; Involved in cell division; probably involved in intracellular septation; Belongs to the YciB family.
  
    0.835
LP43_0573
Cell division protein BolA; Belongs to the BolA/IbaG family.
       0.833
LP43_0572
Hypothetical protein.
       0.774
LP43_0576
Putative metal-dependent phosphoesterases (PHP family).
  
    0.687
yciO
YciO family; Belongs to the SUA5 family.
       0.527
LP43_0553
Phosphoheptose isomerase 1.
   
    0.513
hisE
Phosphoribosyl-ATP pyrophosphatase.
  
    0.509
ftsL
Cell division protein FtsL; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic.
  
     0.470
LP43_0578
1-acyl-sn-glycerol-3-phosphate acyltransferase.
       0.451
tatA-2
Twin-arginine translocation protein TatA; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
  
    0.443
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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