Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LP43_0631Hypothetical protein. (93 aa)    
Predicted Functional Partners:
yrbF
Putative ABC transporter, ATP-binding protein YrbF.
  
 0.846
yrbD
Putative ABC transporter, periplasmic component YrbD.
  
 0.772
yrbE
Putative ABC transporter, permease component YrbE.
  
 0.764
yrbC
Putative ABC transporter, auxiliary component YrbC.
  
 
 0.740
LP43_0630
Hypothetical protein.
       0.655
LP43_0632
Chemotaxis regulator.
       0.655
cheA-2
Signal transduction histidine kinase CheA.
       0.571
cheW
Positive regulator of CheA protein activity (CheW).
       0.554
LP43_0635
Chromosome (plasmid) partitioning protein ParA/Sporulation initiation inhibitor protein Soj.
       0.474
LP43_0636
Methyl-accepting chemotaxis protein I (serine chemoreceptor protein).
       0.474
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.