Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LP43_0647Hypothetical protein. (267 aa)    
Predicted Functional Partners:
LP43_0648
Hypothetical protein.
 
  
 0.942
LP43_2299
Response regulator NasT.
  
 
 0.808
xoxF
Methanol dehydrogenase large subunit protein.
 
    0.674
LP43_1153
Glucose dehydrogenase, PQQ-dependent.
 
    0.674
xoxF-2
Methanol dehydrogenase large subunit protein.
 
    0.673
xoxF-3
Methanol dehydrogenase large subunit protein.
 
    0.673
xoxF-4
Methanol dehydrogenase large subunit protein.
 
    0.673
LP43_2431
Hypothetical protein.
 
  
 0.646
LP43_0440
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s).
  
  
 0.644
LP43_0241
Glutamate synthase [NADPH] subunit alpha.
     
 0.626
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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