Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LP43_0648Hypothetical protein. (317 aa)    
Predicted Functional Partners:
LP43_0647
Hypothetical protein.
 
  
 0.942
LP43_0241
Glutamate synthase [NADPH] subunit alpha.
    
  0.902
LP43_0901
5-methyltetrahydrofolate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
    
  0.821
xoxF
Methanol dehydrogenase large subunit protein.
  
 
  0.798
xoxF-2
Methanol dehydrogenase large subunit protein.
  
 
  0.797
xoxF-3
Methanol dehydrogenase large subunit protein.
  
 
  0.797
xoxF-4
Methanol dehydrogenase large subunit protein.
  
 
  0.797
mxaF
Methanol dehydrogenase, large subunit.
  
 
  0.787
LP43_1153
Glucose dehydrogenase, PQQ-dependent.
  
 
  0.781
mauA
Methylamine dehydrogenase light chain precursor; Belongs to the aromatic amine dehydrogenase light chain family.
   
  0.774
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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