Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
LP43_0705Outer membrane protein. (276 aa)    
Predicted Functional Partners:
LP43_1154
SAM-dependent methyltransferase.
  
   
 0.822
LP43_0559
InaA protein.
 
     0.768
guaA
GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP.
     
  0.763
LP43_0556
Serine/threonine protein kinase.
  
     0.757
LP43_0555
Lipopolysaccharide core biosynthesis protein WaaP, heptosyl-I-kinase; Catalyzes the phosphorylation of heptose(I) of the outer membrane lipopolysaccharide core; Belongs to the protein kinase superfamily. KdkA/rfaP family.
  
     0.754
LP43_0558
Carbamoyltransferase in large core OS assembly cluster.
  
     0.713
LP43_0554
UDP-glucose:(heptosyl) LPS alpha1,3-glucosyltransferase WaaG.
  
     0.629
LP43_1928
Hypothetical protein.
  
     0.579
LP43_0552
Oxidoreductase, FAD-binding.
  
     0.543
LP43_1277
Thermostable hemolysin delta-VPH.
  
     0.518
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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