Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LP43_0759Hypothetical protein. (314 aa)    
Predicted Functional Partners:
LP43_1385
Cryptochrome; Belongs to the DNA photolyase family.
  
  
 0.880
LP43_2447
Deoxyribodipyrimidine photolyase; Belongs to the DNA photolyase family.
  
  
 0.880
hemH
Ferrochelatase, protoheme ferro-lyase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
  
  
 0.705
LP43_0758
Cell division inhibitor.
  
    0.695
LP43_1646
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase.
 
     0.666
LP43_0760
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s).
       0.599
LP43_0761
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s).
       0.585
LP43_0762
Acetylspermidine deacetylase.
       0.529
LP43_0559
InaA protein.
 
    0.520
LP43_2121
Hypothetical protein.
     
 0.509
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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