STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LP43_0763Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase/3-hydroxyacyl-CoA dehydrogenase. (297 aa)    
Predicted Functional Partners:
LP43_0764
Hypothetical protein.
  
 
 0.997
LP43_2228
Hypothetical protein.
    
 0.995
LP43_2231
Hypothetical protein.
   
 0.995
LP43_0722
Hypothetical protein.
   
 0.989
LP43_2129
Sensory box histidine kinase/response regulator.
    
 0.989
LP43_1220
acyl-CoA dehydrogenase.
 
 0.985
LP43_0503
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s).
    
 0.974
rpsI
SSU ribosomal protein S9p (S16e); Belongs to the universal ribosomal protein uS9 family.
  
 
   0.962
rpmG
LSU ribosomal protein L33p; Belongs to the bacterial ribosomal protein bL33 family.
    
 
 0.961
rpsP
SSU ribosomal protein S16p; Belongs to the bacterial ribosomal protein bS16 family.
    
   0.957
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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