Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LP43_0767Hypothetical protein. (752 aa)    
Predicted Functional Partners:
LP43_1493
Hypothetical protein.
  
     0.764
LP43_0559
InaA protein.
 
   0.736
LP43_0768
Hypothetical protein.
       0.675
LP43_1928
Hypothetical protein.
  
     0.664
LP43_0766
Alkylated DNA repair protein AlkB.
       0.655
LP43_0555
Lipopolysaccharide core biosynthesis protein WaaP, heptosyl-I-kinase; Catalyzes the phosphorylation of heptose(I) of the outer membrane lipopolysaccharide core; Belongs to the protein kinase superfamily. KdkA/rfaP family.
  
 
  0.651
LP43_1959
TPR repeat.
 
 
   0.647
LP43_2010
Hypothetical protein.
  
     0.633
mxaS-2
MxaS protein.
  
     0.628
LP43_0386
Secreted protein, containing von Willebrand factor (VWF) type A domain.
  
    0.621
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.