STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LP43_0787Amine oxidase, flavin-containing. (331 aa)    
Predicted Functional Partners:
LP43_2446
Deoxyribodipyrimidine photolyase-related protein.
 
     0.722
hemH
Ferrochelatase, protoheme ferro-lyase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
    
 0.559
LP43_1329
C factor cell-cell signaling protein.
  
     0.548
LP43_0788
NADH dehydrogenase.
       0.532
LP43_0789
Molybdopterin biosynthesis MoeB protein; Belongs to the sulfur carrier protein TusA family.
       0.532
LP43_2443
Hypothetical protein.
 
     0.481
LP43_0785
Hypothetical protein.
       0.407
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.