Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LP43_0788NADH dehydrogenase. (154 aa)    
Predicted Functional Partners:
LP43_0789
Molybdopterin biosynthesis MoeB protein; Belongs to the sulfur carrier protein TusA family.
 
 
 0.975
LP43_1645
Rhodanese-like domain protein; Belongs to the sulfur carrier protein TusA family.
 
 
 0.820
soxY
Sulfur oxidation protein SoxY.
 
     0.694
soxZ
Sulfur oxidation protein SoxZ.
 
     0.666
LP43_0790
Exported zinc metalloprotease YfgC precursor; Functions as both a chaperone and a metalloprotease. Maintains the integrity of the outer membrane by promoting either the assembly or the elimination of outer membrane proteins, depending on their folding state.
       0.575
LP43_0787
Amine oxidase, flavin-containing.
       0.532
LP43_1912
Hypothetical protein.
  
 
 0.484
LP43_0793
Hypothetical protein.
       0.477
LP43_0794
DNA-binding response regulator, LuxR family.
       0.477
cysG
Uroporphyrinogen-III C-methyltransferase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD-dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme. Belongs to the precorrin methyltransferase family. In the N-terminal section; belongs to the precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase family.
  
  
 0.411
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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