STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
soxYSulfur oxidation protein SoxY. (162 aa)    
Predicted Functional Partners:
soxZ
Sulfur oxidation protein SoxZ.
 
 
 0.999
cysD
Sulfate adenylyltransferase subunit 2.
     
 0.902
soxC
Sulfur oxidation molybdopterin C protein SoxC.
 
  
 0.858
LP43_2404
Sulfur oxidation molybdopterin C protein.
 
  
 0.853
soxD
Sulfite dehydrogenase cytochrome subunit SoxD.
 
  
 0.839
soxD-2
Sulfite dehydrogenase cytochrome subunit SoxD.
 
  
 0.836
LP43_0790
Exported zinc metalloprotease YfgC precursor; Functions as both a chaperone and a metalloprotease. Maintains the integrity of the outer membrane by promoting either the assembly or the elimination of outer membrane proteins, depending on their folding state.
       0.812
LP43_0511
Hypothetical protein.
  
  
  0.722
LP43_0510
Hypothetical protein.
  
  
  0.721
LP43_1044
Sulfide dehydrogenase [flavocytochrome C] flavoprotein chain precursor.
 
   
 0.697
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.