Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
soxYSulfur oxidation protein SoxY. (162 aa)    
Predicted Functional Partners:
soxZ
Sulfur oxidation protein SoxZ.
 
 
 0.999
soxC
Sulfur oxidation molybdopterin C protein SoxC.
 
  
 0.842
LP43_2404
Sulfur oxidation molybdopterin C protein.
 
  
 0.837
cysN
Sulfate adenylyltransferase subunit 1; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.
     
  0.836
cysD
Sulfate adenylyltransferase subunit 2.
     
  0.836
soxD
Sulfite dehydrogenase cytochrome subunit SoxD.
 
  
 0.832
soxD-2
Sulfite dehydrogenase cytochrome subunit SoxD.
 
  
 0.828
LP43_0790
Exported zinc metalloprotease YfgC precursor; Functions as both a chaperone and a metalloprotease. Maintains the integrity of the outer membrane by promoting either the assembly or the elimination of outer membrane proteins, depending on their folding state.
       0.806
LP43_1044
Sulfide dehydrogenase [flavocytochrome C] flavoprotein chain precursor.
 
   
 0.742
LP43_0839
Formate dehydrogenase-O, iron-sulfur subunit/putative formate dehydrogenase iron-sulfur subunit.
  
  
  0.732
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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