Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LP43_0795Sensor histidine kinase. (448 aa)    
Predicted Functional Partners:
LP43_0796
DNA-binding response regulator, LuxR family.
 
  0.969
LP43_0794
DNA-binding response regulator, LuxR family.
 
  0.916
LP43_0798
DNA-binding response regulator, LuxR family.
 
  0.901
LP43_0817
Two-component response regulator.
  
  0.870
LP43_1495
Two-component response regulator.
  
  0.870
LP43_1195
BarA-associated response regulator UvrY.
  
  0.868
LP43_1546
Hypothetical protein.
  
  0.868
LP43_1973
Two-component response regulator.
  
  0.868
mxaX
DNA-binding response regulator, LuxR family.
  
  0.866
LP43_1396
Nitrate/nitrite response regulator protein.
 
  0.856
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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