STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LP43_0866Ferric iron ABC transporter, permease protein. (550 aa)    
Predicted Functional Partners:
LP43_0867
Ferric iron ABC transporter, iron-binding protein.
 
 
 0.998
LP43_0865
Ferric iron ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.993
LP43_2480
ABC-type tungstate transport system, ATP-binding protein; Belongs to the ABC transporter superfamily.
    
  0.743
LP43_1695
Vitamin B12 ABC transporter, B12-binding component BtuF.
   
    0.524
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
       0.501
LP43_2296
Nitrate ABC transporter, ATP-binding protein.
    
  0.499
LP43_1696
Iron(III) ABC transporter, ATP-binding protein.
   
  
 0.456
LP43_2344
Ferrichrome transport ATP-binding protein FhuC; (TC 3.A.1.14.3).
   
  
 0.456
LP43_2346
Putative periplasmic substrate-binding transport protein.
   
    0.442
thiE
Phosphomethylpyrimidine kinase/Thiamin-phosphate pyrophosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family.
  
  
 0.425
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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