Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LP43_0867Ferric iron ABC transporter, iron-binding protein. (343 aa)    
Predicted Functional Partners:
LP43_0866
Ferric iron ABC transporter, permease protein.
 
 
 0.998
LP43_0865
Ferric iron ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.992
LP43_2480
ABC-type tungstate transport system, ATP-binding protein; Belongs to the ABC transporter superfamily.
  
 
  0.730
fliL
Flagellar biosynthesis protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
    
   0.609
fliL-2
Flagellar biosynthesis protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
    
   0.512
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
       0.505
LP43_1221
Sensory box histidine kinase.
     
  0.461
cysN
Sulfate adenylyltransferase subunit 1; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.
     
  0.461
pstA
Phosphate transport system permease protein PstA; (TC 3.A.1.7.1).
     
  0.452
LP43_0369
Flagellar motor rotation protein MotB.
    
   0.446
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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