STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LP43_0880Protein YhgH. (239 aa)    
Predicted Functional Partners:
LP43_0247
Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake.
 
 
 0.949
LP43_0919
Putative hydrolase (metallo-beta-lactamase superfamily).
 
  
 0.905
LP43_0077
DNA repair protein RadC; Belongs to the UPF0758 family.
 
    0.853
LP43_1097
ComM-related protein.
 
  
 0.833
flgC
Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
   
   0.799
LP43_2118
Hypothetical protein.
  
  
 0.743
LP43_0879
Hypothetical protein.
  
    0.718
LP43_1881
Putative endonuclease; Belongs to the UPF0102 family.
 
    0.693
LP43_1607
Cyclohexadienyl dehydrogenase.
   
  
 0.682
LP43_2119
Hypothetical protein.
  
  
 0.677
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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