Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
LP43_2118 | LP43_2119 | LP43_2118 | LP43_2119 | Hypothetical protein. | Hypothetical protein. | 0.999 |
LP43_2118 | LP43_2228 | LP43_2118 | LP43_2228 | Hypothetical protein. | Hypothetical protein. | 0.999 |
LP43_2118 | LP43_2231 | LP43_2118 | LP43_2231 | Hypothetical protein. | Hypothetical protein. | 0.999 |
LP43_2118 | bioF | LP43_2118 | LP43_0882 | Hypothetical protein. | 8-amino-7-oxononanoate synthase; Catalyzes the decarboxylative condensation of pimeloyl-[acyl- carrier protein] and L-alanine to produce 8-amino-7-oxononanoate (AON), [acyl-carrier protein], and carbon dioxide. | 0.939 |
LP43_2119 | LP43_2118 | LP43_2119 | LP43_2118 | Hypothetical protein. | Hypothetical protein. | 0.999 |
LP43_2119 | LP43_2228 | LP43_2119 | LP43_2228 | Hypothetical protein. | Hypothetical protein. | 0.999 |
LP43_2119 | LP43_2231 | LP43_2119 | LP43_2231 | Hypothetical protein. | Hypothetical protein. | 0.999 |
LP43_2119 | bioF | LP43_2119 | LP43_0882 | Hypothetical protein. | 8-amino-7-oxononanoate synthase; Catalyzes the decarboxylative condensation of pimeloyl-[acyl- carrier protein] and L-alanine to produce 8-amino-7-oxononanoate (AON), [acyl-carrier protein], and carbon dioxide. | 0.935 |
LP43_2228 | LP43_2118 | LP43_2228 | LP43_2118 | Hypothetical protein. | Hypothetical protein. | 0.999 |
LP43_2228 | LP43_2119 | LP43_2228 | LP43_2119 | Hypothetical protein. | Hypothetical protein. | 0.999 |
LP43_2228 | LP43_2231 | LP43_2228 | LP43_2231 | Hypothetical protein. | Hypothetical protein. | 0.999 |
LP43_2228 | bioF | LP43_2228 | LP43_0882 | Hypothetical protein. | 8-amino-7-oxononanoate synthase; Catalyzes the decarboxylative condensation of pimeloyl-[acyl- carrier protein] and L-alanine to produce 8-amino-7-oxononanoate (AON), [acyl-carrier protein], and carbon dioxide. | 0.901 |
LP43_2231 | LP43_2118 | LP43_2231 | LP43_2118 | Hypothetical protein. | Hypothetical protein. | 0.999 |
LP43_2231 | LP43_2119 | LP43_2231 | LP43_2119 | Hypothetical protein. | Hypothetical protein. | 0.999 |
LP43_2231 | LP43_2228 | LP43_2231 | LP43_2228 | Hypothetical protein. | Hypothetical protein. | 0.999 |
LP43_2231 | bioF | LP43_2231 | LP43_0882 | Hypothetical protein. | 8-amino-7-oxononanoate synthase; Catalyzes the decarboxylative condensation of pimeloyl-[acyl- carrier protein] and L-alanine to produce 8-amino-7-oxononanoate (AON), [acyl-carrier protein], and carbon dioxide. | 0.903 |
bioA | bioB | LP43_1549 | LP43_0881 | Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Catalyzes the transfer of the alpha-amino group from S- adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. BioA subfamily. | Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family. | 0.989 |
bioA | bioC | LP43_1549 | LP43_0884 | Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Catalyzes the transfer of the alpha-amino group from S- adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. BioA subfamily. | Biotin synthesis protein BioC; Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl-L- methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway. | 0.700 |
bioA | bioD | LP43_1549 | LP43_0885 | Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Catalyzes the transfer of the alpha-amino group from S- adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. BioA subfamily. | Dethiobiotin synthetase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring. | 0.998 |
bioA | bioF | LP43_1549 | LP43_0882 | Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Catalyzes the transfer of the alpha-amino group from S- adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. BioA subfamily. | 8-amino-7-oxononanoate synthase; Catalyzes the decarboxylative condensation of pimeloyl-[acyl- carrier protein] and L-alanine to produce 8-amino-7-oxononanoate (AON), [acyl-carrier protein], and carbon dioxide. | 0.989 |
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