Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
parAChromosome (plasmid) partitioning protein ParA. (262 aa)    
Predicted Functional Partners:
LP43_0230
Chromosome (plasmid) partitioning protein ParB/Stage 0 sporulation protein J; Belongs to the ParB family.
 
 
 0.936
LP43_0939
CheW domain protein.
 
 
 0.894
cheZ
Chemotaxis response - phosphatase CheZ; Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P).
 
    0.844
LP43_0946
Chemotaxis regulator.
 
     0.800
cheB
Chemotaxis response regulator protein-glutamate methylesterase CheB; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
  
    0.788
motA
Flagellar motor rotation protein MotA.
  
    0.777
motB
Flagellar motor rotation protein MotB.
  
    0.776
cheA-3
Signal transduction histidine kinase CheA.
  
    0.775
fleN
Flagellar synthesis regulator FleN.
 
  
 0.768
flhF
Flagellar biosynthesis protein FlhF.
 
    0.727
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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