Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
LP43_0968CopG protein. (168 aa)    
Predicted Functional Partners:
LP43_0967
Permeases of the drug/metabolite transporter (DMT) superfamily.
       0.774
LP43_0970
TRAP transporter solute receptor, unknown substrate 6; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
       0.774
LP43_0969
Hypothetical protein.
       0.773
LP43_0971
ATP-dependent DNA helicase UvrD/PcrA.
       0.727
LP43_0965
ATP-dependent RNA helicase SrmB; Belongs to the DEAD box helicase family.
       0.608
LP43_0966
Putative periplasmic ATP/GTP-binding protein.
       0.608
LP43_0109
Multicopper oxidase.
 
   
 0.562
LP43_2074
Lead, cadmium, zinc and mercury transporting ATPase/Copper-translocating P-type ATPase.
 
   
 0.498
LP43_0964
Paraquat-inducible protein A.
       0.483
LP43_0110
Copper resistance protein B.
 
   
 0.482
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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