STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LP43_0970TRAP transporter solute receptor, unknown substrate 6; Part of the tripartite ATP-independent periplasmic (TRAP) transport system. (370 aa)    
Predicted Functional Partners:
dctM
TRAP dicarboxylate transporter, DctM subunit, unknown substrate 6.
 
  
 0.812
dctQ
TRAP dicarboxylate transporter, DctQ subunit, unknown substrate 6.
 
    0.803
LP43_0967
Permeases of the drug/metabolite transporter (DMT) superfamily.
       0.781
LP43_0968
CopG protein.
       0.781
LP43_0969
Hypothetical protein.
       0.773
LP43_0971
ATP-dependent DNA helicase UvrD/PcrA.
       0.744
LP43_0965
ATP-dependent RNA helicase SrmB; Belongs to the DEAD box helicase family.
       0.610
LP43_0966
Putative periplasmic ATP/GTP-binding protein.
       0.608
LP43_0964
Paraquat-inducible protein A.
       0.483
LP43_0972
Thioredoxin; Belongs to the thioredoxin family.
       0.432
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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