STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LP43_1019Cytochrome c class I. (98 aa)    
Predicted Functional Partners:
LP43_1044
Sulfide dehydrogenase [flavocytochrome C] flavoprotein chain precursor.
 
 
 0.996
LP43_2247
Oxidoreductase (flavoprotein).
   
 0.975
LP43_2500
Cysteine synthase A.
     
 0.911
ccoO
Cytochrome c oxidase subunit CcoO.
  
 0.838
LP43_1870
Cytochrome c oxidase polypeptide II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
  
 
 0.817
mgdC
N-methyl glutamate dehydrogenase/oxidoreductase subunit C; Belongs to the GcvT family.
   
 0.719
LP43_2085
L-sorbosone dehydrogenase.
    
  0.673
LP43_1187
Cytochrome c oxidase subunit CcoN.
  
 0.633
LP43_1249
Cytochrome c oxidase subunit CcoN; Belongs to the heme-copper respiratory oxidase family.
  
 0.633
ccoN
Cytochrome c oxidase subunit CcoN; Belongs to the heme-copper respiratory oxidase family.
  
 0.633
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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