Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
LP43_1023ABC-type transport system involved in multi-copper enzyme maturation, permease component. (247 aa)    
Predicted Functional Partners:
LP43_1024
ABC-type multidrug transport system, ATPase component.
 
  0.979
LP43_1022
Mucin 2 precursor.
 
  
 0.961
LP43_1021
Hypothetical protein.
 
     0.944
LP43_0749
ABC transporter, ATP-binding protein.
 
  0.909
mutM
Formamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates.
       0.833
LP43_1025
Putative signal transduction protein.
       0.774
gldG
Gliding motility protein GldG.
 
  
 0.669
LP43_0805
ABC transporter, ATP-binding protein.
  
  0.616
LP43_1944
ABC transporter ATP-binding protein.
  
  0.616
LP43_2472
ABC-type multidrug transport system, ATPase component.
  
  0.616
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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