Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LP43_1102Hypothetical protein; Belongs to the UPF0178 family. (150 aa)    
Predicted Functional Partners:
LP43_1103
Na(+) H(+) antiporter subunit G.
       0.774
LP43_1104
Na(+) H(+) antiporter subunit F.
       0.774
LP43_1105
Na(+) H(+) antiporter subunit E.
       0.774
LP43_1106
Na(+) H(+) antiporter subunit D.
       0.774
LP43_1107
Na(+) H(+) antiporter subunit C.
       0.774
LP43_1108
Na(+) H(+) antiporter subunit A/Na(+) H(+) antiporter subunit B.
       0.774
LP43_1101
Cytochrome B561.
       0.568
LP43_1109
Cytochrome c5.
       0.517
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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