Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LP43_1152Acyl-CoA thioesterase YciA. (128 aa)    
Predicted Functional Partners:
LP43_0011
4-hydroxybenzoyl-CoA thioesterase family active site.
 
 
 0.698
LP43_0763
Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase/3-hydroxyacyl-CoA dehydrogenase.
 
 
  0.671
LP43_1220
acyl-CoA dehydrogenase.
    
 0.529
LP43_1475
Enoyl-[acyl-carrier-protein] reductase [NADH].
  
    0.512
LP43_1153
Glucose dehydrogenase, PQQ-dependent.
       0.498
LP43_1752
3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase; Necessary for the introduction of cis unsaturation into fatty acids. Catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to E- (2)-decenoyl-ACP and then its isomerization to Z-(3)-decenoyl-ACP. Can catalyze the dehydratase reaction for beta-hydroxyacyl-ACPs with saturated chain lengths up to 16:0, being most active on intermediate chain length.
  
  
 0.491
LP43_1151
Hypothetical protein.
       0.483
LP43_2026
Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex.
    
 0.480
LP43_2501
Hypothetical protein.
  
  
  0.425
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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