Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LP43_1196Hypothetical protein. (102 aa)    
Predicted Functional Partners:
LP43_1197
NnrS protein involved in response to NO.
 
    0.690
LP43_2317
Hypothetical protein.
  
     0.496
LP43_0967
Permeases of the drug/metabolite transporter (DMT) superfamily.
  
     0.495
LP43_0386
Secreted protein, containing von Willebrand factor (VWF) type A domain.
  
     0.491
LP43_0767
Hypothetical protein.
  
     0.447
LP43_0387
Putative biopolymer transport protein, ExbB family.
  
     0.409
LP43_0389
Serine/threonine kinase.
  
     0.407
LP43_2201
Hypothetical protein.
  
     0.405
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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