Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LP43_1209Cyanoglobin/Hemoglobin-like protein HbN. (120 aa)    
Predicted Functional Partners:
LP43_1210
Hypothetical protein.
       0.709
LP43_2118
Hypothetical protein.
     
  0.664
LP43_1208
Alkane-1 monooxygenase.
 
     0.640
LP43_1211
Hypothetical protein.
       0.581
LP43_1212
Methane monooxygenase component C.
       0.561
cheA
Signal transduction histidine kinase CheA.
     
  0.505
LP43_0753
Chemotaxis protein CheV.
     
  0.456
LP43_2283
Chemotaxis protein CheV.
     
  0.456
LP43_1214
Membrane protein involved in aromatic hydrocarbon degradation.
 
     0.454
LP43_2228
Hypothetical protein.
     
  0.454
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.