Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
LP43_1222Two-component nitrogen fixation transcriptional regulator FixJ. (192 aa)    
Predicted Functional Partners:
LP43_1221
Sensory box histidine kinase.
 
 0.990
LP43_2231
Hypothetical protein.
   
 0.958
LP43_0503
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s).
   
 0.918
LP43_0636
Methyl-accepting chemotaxis protein I (serine chemoreceptor protein).
   
 0.910
LP43_2119
Hypothetical protein.
   
 0.874
LP43_2118
Hypothetical protein.
   
 0.869
LP43_2129
Sensory box histidine kinase/response regulator.
   
 0.821
LP43_0371
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s).
   
 0.800
cheA
Signal transduction histidine kinase CheA.
   
 0.782
LP43_1994
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s).
   
 0.773
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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