Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LP43_1225Outer membrane protein OprN. (481 aa)    
Predicted Functional Partners:
LP43_1227
Multidrug efflux membrane fusion protein MexE; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.991
LP43_1226
RND efflux system, inner membrane transporter CmeB.
 0.990
cmeA
RND efflux system, membrane fusion protein CmeA; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.965
cmeB
RND efflux system, inner membrane transporter CmeB.
 0.956
LP43_1280
Membrane fusion protein of RND family multidrug efflux pump.
  
 0.892
LP43_0273
Putative Co/Zn/Cd efflux system membrane fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.818
LP43_1618
Membrane fusion protein of RND family multidrug efflux pump; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.775
LP43_1617
RND efflux system, outer membrane lipoprotein, NodT family.
  
  
 
0.758
LP43_0810
Type I secretion outer membrane protein, TolC precursor.
     
 0.744
LP43_0097
Putative Co/Zn/Cd efflux system membrane fusion protein.
  
 0.738
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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