STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LP43_1228Aromatic hydrocarbon utilization transcriptional regulator CatR (LysR family); Belongs to the LysR transcriptional regulatory family. (303 aa)    
Predicted Functional Partners:
yeiE
LysR family transcriptional regulator YeiE; Belongs to the LysR transcriptional regulatory family.
  
     0.739
LP43_1182
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.563
LP43_1226
RND efflux system, inner membrane transporter CmeB.
 
     0.503
LP43_0241
Glutamate synthase [NADPH] subunit alpha.
     
 0.502
LP43_1225
Outer membrane protein OprN.
 
    0.445
LP43_1227
Multidrug efflux membrane fusion protein MexE; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
     0.435
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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