Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LP43_1268Hypothetical protein. (228 aa)    
Predicted Functional Partners:
LP43_1269
High-affinity iron permease.
 
     0.960
LP43_1270
Hypothetical protein.
 
     0.960
LP43_1271
Hypothetical protein.
 
     0.951
LP43_1277
Thermostable hemolysin delta-VPH.
 
     0.897
LP43_1275
Long-chain acyl-CoA synthetase.
 
     0.891
LP43_1273
Hypothetical protein.
 
     0.876
LP43_1276
Long-chain-fatty-acid--CoA ligase.
 
     0.867
LP43_1274
Oxidoreductase, short-chain dehydrogenase/reductase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.841
LP43_1272
Two-component system response regulator QseB.
 
     0.837
LP43_2302
Hypothetical protein.
  
     0.636
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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