STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LP43_1269High-affinity iron permease. (261 aa)    
Predicted Functional Partners:
LP43_1270
Hypothetical protein.
 
     0.955
LP43_1268
Hypothetical protein.
 
     0.952
LP43_1271
Hypothetical protein.
 
     0.921
LP43_1277
Thermostable hemolysin delta-VPH.
 
     0.881
LP43_1275
Long-chain acyl-CoA synthetase.
 
     0.879
LP43_1273
Hypothetical protein.
 
     0.859
LP43_1276
Long-chain-fatty-acid--CoA ligase.
 
     0.851
LP43_1272
Two-component system response regulator QseB.
 
     0.838
LP43_1274
Oxidoreductase, short-chain dehydrogenase/reductase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.837
LP43_0867
Ferric iron ABC transporter, iron-binding protein.
   
    0.660
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.