Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LP43_1272Two-component system response regulator QseB. (219 aa)    
Predicted Functional Partners:
LP43_1271
Hypothetical protein.
 
 0.987
LP43_2231
Hypothetical protein.
 
 0.979
LP43_2118
Hypothetical protein.
  
 0.968
LP43_1567
Hypothetical protein.
 
 0.965
LP43_2228
Hypothetical protein.
 
 0.956
LP43_2129
Sensory box histidine kinase/response regulator.
 
 0.952
LP43_2119
Hypothetical protein.
  
 0.949
LP43_0722
Hypothetical protein.
 
 0.909
LP43_1221
Sensory box histidine kinase.
 
 
 0.883
phoR
Phosphate regulon sensor protein PhoR (SphS).
 0.842
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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