Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
LP43_1287Aspartyl aminopeptidase. (405 aa)    
Predicted Functional Partners:
LP43_1286
Hypothetical protein.
       0.741
LP43_1285
Hypothetical protein.
       0.648
LP43_1288
Hypothetical protein.
       0.476
LP43_0269
Alkyl hydroperoxide reductase subunit C-like protein.
   
   0.463
LP43_1548
Alkyl hydroperoxide reductase protein C; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.
   
   0.463
LP43_1284
Methyltransferase-related protein.
       0.452
LP43_1289
Hypothetical protein.
       0.403
LP43_1291
Putative YcgN protein; Belongs to the UPF0260 family.
       0.403
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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