Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LP43_1334Hypothetical protein. (1347 aa)    
Predicted Functional Partners:
LP43_1335
Outer membrane protein.
 
 0.999
bamA
Outer membrane protein assembly factor YaeT precursor; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
   
 0.630
LP43_1817
Hypothetical protein.
  
   
 0.598
LP43_1336
Transcriptional regulator, AraC family.
       0.547
LP43_1687
Hypothetical protein.
  
     0.495
LP43_0456
TPR repeat containing protein.
  
     0.491
LP43_1648
Hypothetical protein.
  
   
 0.464
smg
Protein of unknown function Smg; Belongs to the Smg family.
  
     0.450
LP43_1339
Ribosome-associated heat shock protein; Belongs to the HSP15 family.
 
     0.444
pilW
Type IV fimbrial biogenesis protein PilW.
  
     0.429
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.