Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LP43_1368Glyoxalase family protein. (130 aa)    
Predicted Functional Partners:
LP43_1366
OsmC/Ohr family protein.
       0.833
LP43_1367
Hypothetical protein.
 
     0.800
LP43_1369
Protein YcgL.
       0.773
LP43_1212
Methane monooxygenase component C.
  
 
 0.723
trpF
Phosphoribosylanthranilate isomerase; Belongs to the TrpF family.
   
  0.723
LP43_0375
Pyruvate carboxyl transferase subunit B.
    
  0.659
LP43_2064
Oxaloacetate decarboxylase alpha chain.
    
  0.659
nuoI
NADH-ubiquinone oxidoreductase chain I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
   
 
  0.604
LP43_1365
Cyclic AMP receptor protein.
       0.604
LP43_1659
4Fe-4S ferredoxin, iron-sulfur binding.
   
 
  0.604
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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