Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LP43_1381Radical SAM, Pyruvate-formate lyase-activating enzyme like. (320 aa)    
Predicted Functional Partners:
LP43_1382
Putative dioxygenase; Belongs to the MEMO1 family.
 
     0.909
LP43_1383
Putative dioxygenase.
 
     0.909
LP43_2176
Ribonucleotide reductase of class Ia (aerobic), alpha subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
  
  
 0.727
LP43_1380
Hypothetical protein.
       0.523
LP43_2026
Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex.
   
  
 0.482
LP43_2304
Nitrite reductase [NAD(P)H] small subunit.
   
  
 0.457
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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