Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LP43_1402Hypothetical protein. (200 aa)    
Predicted Functional Partners:
LP43_1400
Hypothetical protein.
 
   
 0.959
LP43_1401
Flavodoxin reductase (ferredoxin-NADPH reductases) family 1/Vanillate O-demethylase oxidoreductase.
 
     0.958
LP43_1403
Aminomethyltransferase; Belongs to the GcvT family.
 
     0.869
LP43_1406
Amino acid permease.
 
     0.797
mgsB
N-methyl glutamate synthase subunit B.
  
     0.764
mgsA
N-methyl glutamate synthase subunit A.
  
     0.763
mgsC
N-methyl glutamate synthase subunit C; Belongs to the glutamate synthase family.
  
     0.760
LP43_1428
Transcriptional regulator, MerR family.
  
     0.687
mgdD
N-methyl glutamate dehydrogenase/oxidoreductase subunit D.
 
     0.647
LP43_1399
Hypothetical protein.
       0.645
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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