Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LP43_1416Permease. (466 aa)    
Predicted Functional Partners:
LP43_1417
Hypothetical protein.
       0.773
LP43_1418
Hypothetical protein.
       0.773
LP43_1415
Universal stress protein.
       0.741
LP43_1406
Amino acid permease.
  
     0.730
LP43_1411
Dimethylamine permease.
  
     0.684
LP43_1419
Hypothetical protein.
       0.672
LP43_1147
Putative sucrose phosphorylase.
    
  0.659
LP43_1386
Putative sucrose phosphorylase.
    
  0.659
nadE
NAD synthetase/Glutamine amidotransferase chain of NAD synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
   
 0.647
mgdD
N-methyl glutamate dehydrogenase/oxidoreductase subunit D.
 
     0.607
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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