STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LP43_1493Hypothetical protein. (184 aa)    
Predicted Functional Partners:
LP43_0767
Hypothetical protein.
  
     0.764
mxaS-2
MxaS protein.
  
     0.750
LP43_2456
RND-type multidrug efflux pump, membrane permease.
  
     0.728
mxaS
MxaS protein.
  
     0.726
mxaK-2
MxaK protein.
  
     0.725
mxaA-2
MxaA protein.
  
     0.725
mxaL-2
MxaL protein.
  
     0.716
mxaK
MxaK protein.
  
     0.697
LP43_2306
Ketosteroid isomerase-like.
  
     0.695
LP43_1959
TPR repeat.
  
     0.675
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.