Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LP43_1497Hypothetical protein; Belongs to the bacterial secretin family. (743 aa)    
Predicted Functional Partners:
LP43_1495
Two-component response regulator.
  
 
  0.800
LP43_1506
Hypothetical protein.
 
 
 0.799
LP43_1498
Hypothetical protein.
       0.790
LP43_1496
Two-component sensor histidine kinase.
       0.773
LP43_2153
Hypothetical protein.
  
     0.703
flhB
Flagellar biosynthesis protein FlhB; Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the type III secretion exporter family.
   
 
 0.685
LP43_0354
O-Antigen polymerase.
 
     0.650
LP43_1493
Hypothetical protein.
 
     0.641
LP43_0026
Phosphate-specific outer membrane porin OprP/Pyrophosphate-specific outer membrane porin OprO.
  
     0.632
pilC-2
Type IV fimbrial assembly protein PilC.
 
  
 0.631
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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