STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pilC-2Type IV fimbrial assembly protein PilC. (404 aa)    
Predicted Functional Partners:
pilB-2
Type IV fimbrial assembly, ATPase PilB.
 
 
 0.990
pilB
Type IV fimbrial assembly, ATPase PilB.
 
 
 0.961
LP43_1505
Hypothetical protein.
 
  
 0.917
LP43_1504
Hypothetical protein.
  
  
 0.912
LP43_0536
Leader peptidase (Prepilin peptidase)/N-methyltransferase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.862
LP43_1506
Hypothetical protein.
 
  
 0.826
LP43_2411
Twitching motility protein PilT.
 
   
 0.811
pilT
Twitching motility protein PilT.
  
   
 0.780
LP43_2410
Twitching motility protein PilT.
  
   
 0.778
LP43_0919
Putative hydrolase (metallo-beta-lactamase superfamily).
   
  
 0.773
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.