Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LP43_1504Hypothetical protein. (346 aa)    
Predicted Functional Partners:
pilB-2
Type IV fimbrial assembly, ATPase PilB.
  
 0.936
pilC-2
Type IV fimbrial assembly protein PilC.
  
  
 0.917
LP43_1503
Hypothetical protein.
       0.793
LP43_1502
Hypothetical protein.
       0.774
LP43_1505
Hypothetical protein.
       0.748
pilB
Type IV fimbrial assembly, ATPase PilB.
  
 0.732
pilC
Type IV fimbrial assembly protein PilC.
  
  
 0.650
LP43_0919
Putative hydrolase (metallo-beta-lactamase superfamily).
  
  
 0.593
LP43_0491
Single-stranded DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
   
    0.470
LP43_1506
Hypothetical protein.
       0.465
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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