Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
LP43_1509PaaD-like protein. (109 aa)    
Predicted Functional Partners:
sufE
Putative iron-sulfur cluster assembly scaffold protein for SUF system, SufE2.
 
  
 0.967
sufC
Iron-sulfur cluster assembly ATPase protein SufC.
 
  
 0.958
sufD
Iron-sulfur cluster assembly protein SufD.
 
   
 0.946
sufS
Cysteine desulfurase, SufS subfamily; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
  
 0.928
sufB
Iron-sulfur cluster assembly protein SufB.
 
   
 0.909
LP43_0858
Hypothetical protein.
  
 
 0.898
LP43_1401
Flavodoxin reductase (ferredoxin-NADPH reductases) family 1/Vanillate O-demethylase oxidoreductase.
  
 
 0.897
iscR
Iron-sulfur cluster regulator IscR.
 
   
 0.715
LP43_0763
Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase/3-hydroxyacyl-CoA dehydrogenase.
  
 
 0.587
LP43_1212
Methane monooxygenase component C.
  
 
 0.550
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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