Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mxaA-2MxaA protein. (278 aa)    
Predicted Functional Partners:
mxaL-2
MxaL protein.
 
  
  0.966
mxaK-2
MxaK protein.
 
  
  0.966
mxaC-3
MxaC protein.
 
  
  0.959
mxaS-2
MxaS protein.
 
     0.945
mxaC-2
MxaC protein.
 
  
  0.932
mxaL
MxaL protein.
 
  
  0.854
mxaK
MxaK protein.
 
  
  0.853
mxaR-2
MxaR protein.
 
     0.852
mxaI
Methanol dehydrogenase, small subunit.
 
  
  0.837
mxaC
MxaC protein.
 
  
  0.823
Your Current Organism:
Methylophaga thiooxydans
NCBI taxonomy Id: 392484
Other names: DSM 22068, M. thiooxydans, Methylophaga thiooxidans, Methylophaga thiooxydans corrig. Boden et al. 2011, VKM B-2586, strain DMS010
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